Open Source

Selected projects from my GitHub profile, grouped by how I engage with open-source work.

Community Projects

Projects maintained by broader open-source communities to which I have contributed.

AI-generated conceptual illustration of coordinated computation across multiple devices

Hugging Face Accelerate

A library for running PyTorch across devices and distributed configurations. I contributed fixes for FSDP2 wrap policies and mixed-precision preparation.

GitHub

AI-generated conceptual illustration of smooth transport between two point distributions

TorchCFM

A PyTorch library for Conditional Flow Matching. I contributed a fix so attention-block checkpointing respects its configured flag.

GitHub

Research Projects

AI-generated conceptual illustration of cell clusters connected by an RNA strand

SOAR

The source code and benchmark suite for Single-Cell Omics Arena, which evaluates large language models on cell-type annotation.

GitHub

AI-generated conceptual illustration of text and image perspectives converging into coherent reasoning

MCR

Code and data for Multi-perspective Coherent Reasoning for Helpfulness Prediction of Multimodal Reviews (ACL 2021).

GitHub

Personal Open-Source Projects

AI-generated conceptual illustration of function tasks dispatched to a compute cluster

slurmic

A Python package for seamless function execution on Slurm, with utilities for managing machine-learning experiments.

GitHub

AI-generated conceptual illustration of DNA sequence folding into spatial chromatin contacts

akita-torch

A PyTorch implementation of the Akita model from Basenji for predicting genome folding from DNA sequence.

GitHub