Publications¶
Recent Preprints¶
Featured Publications¶
See also
* indicates equal contributions. My up-to-date publication list can be found on my Google Scholar profile.
Identifying Combinatorial Regulatory Genes for Cell Fate Decision via Reparameterizable Subset Explanations
Junhao Liu, Pengpeng Zhang, Martin Renqiang Min, Jing Zhang
The 31st SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2025 [paper] [code]
Multimodal Cell Context Instruction Tuning for Conditional DNA Regulatory Sequence Generation with Large Language Models
Junhao Liu*, Pengpeng Zhang*, Siwei Xu, Shushrruth Sai Srinivasan, Yongxian Wu, Jing Zhang
2025 IEEE International Conference on Image Processing (ICIP), 2025 [paper] [code]
Understanding Transcriptional Regulatory Redundancy by Learnable Global Subset Perturbations
Junhao Liu*, Siwei Xu*, Dylan Riffle, Ziheng Duan, Martin Renqiang Min, Jing Zhang
Asian Conference on Machine Learning (ACML), 2024 (Best Student Paper Award) [paper] [code]
Learnable Subset Perturbations for Understanding Transcriptional Regulatory Redundancy
Junhao Liu, Siwei Xu, Dylan Riffle, Ziheng Duan, Jing Zhang
NeurIPS 2024 Workshop on Data-driven and Differentiable Simulations, Surrogates, and Solvers [paper] [code]
Hierarchical Context Pruning: Optimizing Real-World Code Completion with Repository-Level Pretrained Code LLMs
Lei Zhang, Yunshui Li, Jiaming Li, Xiaobo Xia, Jiaxi Yang, Run Luo, Minzheng Wang, Longze Chen, Junhao Liu, Min Yang
The 39th Annual AAAI Conference on Artificial Intelligence (AAAI), 2025 [paper]
scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data
Siwei Xu*, Junhao Liu*, Jing Zhang
The Conference on Information and Knowledge Management (CIKM), 2024 [paper] [code]
Single-Cell Genomics and Regulatory Networks for 388 Human Brains
Prashant S. Emani et al.
Multi-perspective Coherent Reasoning for Helpfulness Prediction of Multimodal Reviews
Junhao Liu, Zhen Hai, Min Yang, Lidong Bing
Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics (ACL), 2021 [paper] [code]